• Wu, C-C., H, Rice, W.J., Stokes, D.L. 2008. Structure of a Copper Pump Suggests a Regulatory Role for its Metal Binding Domain. Structure in press

• Owen, G.R, Acehan, D., Derr, K.D., Rice, W.J., Stokes, D.L. 2008. Cryoelectron Tomography of Isolated Desmosomes. Biochemical Society Transactions 36 in press.

• Hu, G. Wei, H, Rice, W.J., Stokes, D.L. Gottlieb, P. 2008. Electron Cryo-Tomographic Structure of Cystovirus phi12. Virology 372:1-9.

• Hu, G., Rice, W.J., Droese, S., Altendorf, K., Stokes, D.L. 2008. Three-dimensional structure for KdpFABC complex of Escherichia coli by electron tomography of two-dimensional crystals. J. Struct. Biol. 161;411-418

• Stokes, D.L. 2007. Desmosomes From A Structural Perspective. Curr. Op. Cell Biol. 19:565-571.

• Vink, M. Derr, K., Love, J., Stokes, D.L., Ubarretxena-Belandia, I. 2007. A high-throughput strategy to screen 2D crystallization trials of membrane proteins. J. Struct. Biol. 160:295-304.

• Acehan, D., Xu, Y., Stokes, D.L., Schlame, M., 2007. Comparison of lymphoblast mitochondria from normal subjects and patients with Barth syndrome using electron microscopic tomography. Lab. Inves. 87: 40-48.

• Pomfret, A.J., W.J. Rice, D.L. Stokes, 2007. Application of the Iterative Helical Real-Space Reconstruction Method to Large Membranous Tubular Crystals of P-type ATPases. J. Struc. Biol. 57:106-116.

• Rice, W.J., Kovalishin, A., Stokes, D.L., 2006. Role of Metal Binding Domains of the Copper Pump from Archeoglobus fulgidis. Biochem. Biophys. Res. Commun 348:124-31.

• Chen, Z., B.L. Akin, D.L. Stokes, L.R. Jones, 2006. Cross-linking of C-terminal Residues of Phospholamban to the Ca²⁺ Pump of Cardiac Sarcoplasmic Reticulum to Probe Spatial and Functional Interactions within the Transmembrane Domain. J. Biol. Chem. 281:14163-14172

• Stokes, D.L., A.J. Pomfret, W.J. Rice, J.P. Glaves, H.S. Young, 2006. Interactions Between Ca²⁺-ATPase and the Pentameric Form of Phospholamban in Two-Dimensional Crystals. Biophys. J. 90:4213-4223.

• Stokes, D.L., F. Delavoie, W.J. Rice, P. Champeil, D.B. McIntosh, J.-J. Lacapere, 2005. Structural Studies of a Stabilized Phosphoenzyme Intermediate of Ca²⁺-ATPase. J. Biol. Chem. 280:18063-18072.

• Chen, Z., D.L. Stokes, L.R. Jones, 2005. Role of leucine 31 of phospholamban in structural and functional interactions with the Ca²⁺ pump of cardiac sarcoplasmic reticulum. J. Biol. Chem. 280:10530-10539

• Hinsen, K., N. Reuter J. Navaza, D.L. Stokes and J.-J. Lacapere, 2005. Normal mode based fitting of atomic structure into electron density maps: application to SR Ca-ATPase. Biophys. J. 88:818-827.

• Young, H.S., D.L. Stokes. 2004. The Mechanics of Calcium Transport. J. Membr. Biol. 198:55-63.

• Ryan, C., D.L. Stokes, M. Chen, Z. Zhang, P.M.D. Hardwicke. 2004. Effect of orthophosphate, nucleotide analogues, ADP, and phosphorylation on the cytoplasmic domains of Ca²⁺-ATPase from scallop sarcoplasmic reticulum. J. Biol. Chem. 279:5380-5386.

• Chen, Z., D.L. Stokes, W.J. Rice, L.R. Jones. 2003. Spatial and Dynamic Interactions between Phospholamban and the Canine Cardiac Ca²⁺ Pump Revealed with Use of Heterobifunctional Cross-Linking Agents. J. Biol. Chem. 278:48348-48356

• He, W., P. Cowin, D.L. Stokes. 2003. Untangling Desmosomal Knots with Electron Tomography. Science 302: 109-113

• Delavoie, F., D. McIntosh, F. Henao, G. Peranzi, P. Champeil, D. Stokes, J.-J. Lacapere. 2003. Projection map of covalently phosphorylated Ca-ATPase from tubular crystals. Ann. N.Y. Acad. Sci. 986:17-19

• Stokes, D.L., N.M. Green. 2003. Structure and function of the calcium pump. Ann. Rev. Biophys. Biomolec. Struc. 32:445-468

• Xu, C., W.J. Rice, W. He, D.L. Stokes. 2002. A Structural Model for the Catalytic Cycle of Ca²⁺-ATPase. J. Mol. Biol.   316:201-211

• Young, H.S., L.R. Jones, D.L. Stokes. 2001. Locating Phospholamban in Co-crystals with Ca²⁺-ATPase by Cryoelectron Microscopy. Biophys. J.  81:884-894.

• Rice, W.J., H.S. Young, D.W. Martin, J.R. Sachs, D.L. Stokes. 2001. Structure of Na⁺,K⁺-ATPase at 11A Resolution: Comparison with Ca²⁺-ATPase in E₁ and E₂ States. Biophys. J. 80:2187-2197.

• Young, H.S., C. Xu, P. Zhang, D.L Stokes. 2001. Locating the Thapsigargin Binding Site on Ca²⁺-ATPase by Cryoelectron Microscopy. J. Mol. Biol. 308:231-240.

• Stokes, D.L., T. Wagenknecht  2000.  Calcium Transport across the Sarcoplasmic Reticulum: Structure and Function of Ca²⁺-ATPase and the Ryanodine Receptor.  Eur. J. Biochem. 267:5274-5279.

• Stokes, D.L., N.M. Green.  2000.  Modeling a Dehalogenase Fold into the 8-Å Density Map for Ca²⁺-ATPase defines a new Domain Structure.  Biophys. J. 78:1765-1776.

• Stokes, D.L., M. Auer, P. Zhang, W. Kuehlbrandt. 1999.  Comparison of H⁺-ATPase and Ca²⁺-ATPase suggests that a large conformational change initiates P-type ion pump reaction cycles.  Current Biol. 9:672-679.

• DeRosier, D.J., D.L. Stokes, S.A. Darst.  1999.  Averaging data derived from images of helical structures with different symmetries.  J. Mol. Biol. 289:159-165.

• Shi, D., M.R. Lewis, H.S. Young, D.L. Stokes.  1998.  Three-dimensional crystals of Ca²⁺-ATPase from sarcoplasmic reticulum:  Merging electron diffraction tilt series and imaging the (h,k,0) projection.  J. Mol. Biol. 284:1547-1564.

• Zhang, P., Toyoshima, C. Yonekura, K. Green, N.M., Stokes, D.L. Stokes. 1998. Structure of the calcium pump from sarcoplasmic reticulum at 8-Å resolution. Nature 392:835-839.

• Lacapere, J.-J., D.L. Stokes, A. Olofsson, J.-L. Rigaud.  1998.  Two-dimensional crystallization of Ca-ATPase by detergent removal.  Biophys. J. 75:1319-1329.

• Ogawa, H., D.L. Stokes, Sasabe, H., C. Toyoshima.  1998.  Structure of the Ca²⁺ pump of sarcoplasmic reticulum: a view along the lipid bilayer at 9 A resolution. Biophys. J.  75:41-52.

• Young, H.S., J.-L. Rigaud, J.-J. Lacapere, L.G. Reddy, D.L. Stokes. 1997. How to make tubular crystals by reconstitution of detergent-solubilized Ca²⁺-ATPase. Biophys. J.  72:2545-2558.

Yonekura, K., D.L. Stokes, H. Sasabe, C. Toyoshima. 1997. The ATP-binding site of Ca²⁺-ATPase revealed by electron image analysis. Biophys. J. 72:997-1005.

• Stokes, D.L. 1997. Keeping calcium in its place: Ca²⁺-ATPase and phospholamban. Current Opinion Struct. Biol. 7:550-556

• Reddy, L.G., L.R. Jones, R.C. Pace, D.L. Stokes. (1996). Purified, Reconstituted Cardiac Ca²⁺-ATPase is Regulated by Phospholamban but not by Direct Phosphorylation with Ca²⁺/Calmodulin-dependent Protein Kinase . J. Biol. Chem. 271:14964-14970.

• Cheong, G. W., H.S. Young, H. Ogawa, C. Toyoshima, D.L. Stokes.  1996.  Lamellar stacking in three-dimensional crystals of Ca²⁺-ATPase from sarcoplasmic reticulum.  Biophys. J. 70:1689-1699.

• Reddy, L.G.,  L.R. Jones,  S.E. Cala,  J..J. O'Brian, S.A. Tatulian and D.L. Stokes..  1995.  Functional reconstitution of recombinant phospholamban with rabbit skeletal  Ca²⁺-ATPase. J. Biol. Chem. 270:9390-9397.

•  Shi, D., H.-H. Hsiung R.C. Pace and D. L. Stokes.  1995.  Preparation and analysis of large, flat crystals of Ca²⁺-ATPase for electron crystallography. Biophys. J. 68:1152-1162.

• Stokes, D.L., W.R. Taylor, Green, N.M.  1994.  Structure, Transmembrane topology and helix packing of P-type ion pumps.  FEBS Letts.  346:32-38.

• Stokes, D.L., Lacapere, J.-L. 1994. Conformation of Ca2+-ATPase in two crystal forms:  effects of Ca2+, thapsigargin, AMP-PCP, and Cr-ATP on crystallization. J. Biol. Chem.  269:11606-11613.

• Toyoshima, C., Sasabe, H., Stokes, D.L. 1993. Three-dimensional cryo-electron microscopy of the calcium ion pump in the sarcoplasmic reticulum. Nature362:469-471.

• Stokes, D.L. and N.M. Green. 1990. The structure of CaATPase: Electron microscopy of frozen hydrated crystals at 6 A resolution in projection. J. Mol. Biol. 213:529-538.

• Stokes, D.L. and N.M. Green. 1990. Three dimensional crystals of CaATPase from sarcoplasmic reticulum: Symmetry and molecular packing. Biophys. J. 57:1-14.